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SWISS-MODEL

https://swissmodel.expasy.org

UniProt/Swiss-Prot

https://www.uniprot.org/

RNA Analysis 

ITS2

https://its2.bioapps.biozentrum.uni-­wuerzburg.de/

LNCipedia

https://www.lncipedia.org/

microRNA.org/miRanda

https://www.microrna.org/microrna/home.do

miRBase

https://www.mirbase.org/

regRNA

https://regrna2.mbc.nctu.edu.tw/

Rfam

https://rfam.xfam.org/

Riboswitch Finder

https://riboswitch.bioapps.biozentrum.uni-­wuerzburg.de/

RNAAnalyzer

https://rnaanalyzer.bioapps.biozentrum.uni-­wuerzburg.de/

RNAfold web server

https://rna.tbi.univie.ac.at/cgi-­bin/RNAWebSuite/

RNAfold.cgi

TargetScan

https://www.targetscan.org

tRNAscan

https://lowelab.ucsc.edu/tRNAscan-­SE/

Vienna Package

https://www.tbi.univie.ac.at/RNA/

Overview of Important Databases and Programs and Their General Use